has been retired
DoDoMa is a tool that automatically identifies transcription factors with matching DNA binding domains, and returns all associated position weight matrix (PWM) identifiers from JASPAR, TRANSFAC, and UniPROBE databases.
Bernard B, Thorsson V, Rovira H, Shmulevich I. Increasing coverage of transcription factor position weight matrices through domain-level homology. PLoS One. 2012;7(8):e42779. doi: 10.1371/journal.pone.0042779. PMID: 22952610; PMCID: PMC3428306.